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Bibliography

This document lists all the bibliographical references mentioned in the ABINIT documentation, with link(s) to the Web pages where such references are mentioned, as well as to the bibtex formatted reference. The full bibtex file is available here.

10.21468/SciPostPhys.14.5.118

Óscar Pozo Ocaña, Ivo Souza
Multipole theory of optical spatial dispersion in crystals
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URL: https://scipost.org/10.21468/SciPostPhys.14.5.118
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AICHHORN2016200

Markus Aichhorn, Leonid Pourovskii, Priyanka Seth, Veronica Vildosola, Manuel Zingl, Oleg E. Peil, Xiaoyu Deng, Jernej Mravlje, Gernot J. Kraberger, Cyril Martins, Michel Ferrero, Olivier Parcollet
TRIQS/DFTTools: A TRIQS application for ab initio calculations of correlated materials
Comput. Phys. Commun. 204, 200-208 (2016)
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Abragam1961

Anatole Abragam
The principles of nuclear magnetism
Oxford university press (1961)

bibtex

Abreu2022

Joao C. de Abreu, Jean Paul Nery, Matteo Giantomassi, Xavier Gonze, Matthieu J. Verstraete
Spectroscopic signatures of nonpolarons: the case of diamond
Phys. Chem. Chem. Phys. 24, 12580 (2022)
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Abrikosov1975

A.A. Abrikosov, L.P. Gorkov, E. Dzyaloshinskii
Methods of quantum field theory in statistical physics
Dover, New-York (1975)
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Adamo1998

Carlo Adamo, Vincenzo Barone
Exchange functionals with improved long-range behavior and adiabatic connection methods without adjustable parameters: The m\(PW\) and m\(PW1PW\) models
J. Chem. Phys. 108, 664-675 (1998)
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Adamo1999

Carlo Adamo, Vincenzo Barone
Toward reliable density functional methods without adjustable parameters: The PBE0 model
J. Chem. Phys. 110, 6158-6170 (1999)
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Adamo2002

Carlo Adamo, Vincenzo Barone
Physically motivated density functionals with improved performances: The modified Perdew–Burke–Ernzerhof model
J. Chem. Phys. 116, 5933-5940 (2002)
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bibtex

Adamson1998

Ross D Adamson, Peter M.W Gill, John A Pople
Empirical density functionals
Chemical Physics Letters 284, 6-11 (1998)
URL: http://dx.doi.org/10.1016/s0009-2614(97)01282-7
bibtex

Adler1962

Stephen L. Adler
Quantum Theory of the Dielectric Constant in Real Solids
Phys. Rev. 126, 413-420 (1962)
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Al-Lehaibi1987

Abdrabuh Al-Lehaibi, James C. Swihart, William H. Butler, Frank J. Pinski
Electron-phonon interaction effects in tantalum
Phys. Rev. B 36, 4103–4111 (1987)
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Albrecht1998

Stefan Albrecht, Lucia Reining, Rodolfo Del Sole, Giovanni Onida
Ab InitioCalculation of Excitonic Effects in the Optical Spectra of Semiconductors
Phys. Rev. Lett. 80, 4510-4513 (1998)
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Alexander2025

Duncan T. L. Alexander, Hugo Meley, Michael Marcus Schmitt, Bernat Mundet, Jean-Marc Triscone, Philippe Ghosez, Stefano Gariglio
Engineering Symmetry Breaking Interfaces by Nanoscale Structural-Energetics in Orthorhombic Perovskite Thin Films
ACS Nano 19, 10126-10137 (2025)
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bibtex

Alfe1999

Dario Alfè
Ab initio molecular dynamics, a simple algorithm for charge extrapolation
Comput. Phys. Commun. 118, 31-33 (1999)
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Allan1996

N. L. Allan, T. H. K. Barron, J. A. O. Bruno
The zero static internal stress approximation in lattice dynamics, and the calculation of isotope effects on molar volumes
J. Chem. Phys. 105, 8300 (1996)
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Allemand2025

Guillaume E. Allemand, Matteo Giantomassi, Matthieu J. Verstraete
First-principles calculations of transport coefficients in the Weyl semimetal TaAs
Phys. Rev. B 112, 125122 (2025)
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Allen1972

Philip B. Allen
Neutron Spectroscopy of Superconductors
Phys. Rev. B 6, 2577–2579 (1972)
URL: https://link.aps.org/doi/10.1103/PhysRevB.6.2577
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Allen1975

P. B. Allen, R. C. Dynes
Transition temperature of strong-coupled superconductors reanalyzed
Phys. Rev. B 12, 905-922 (1975)
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Allen1976

P B Allen, V Heine
Theory of the temperature dependence of electronic band structures
J. Phys. C: Solid State Phys. 9, 2305-2312 (1976)
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bibtex

Allen1976b

Philip B. Allen
Fermi-surface harmonics: A general method for nonspherical problems. Application to Boltzmann and Eliashberg equations
Phys. Rev. B 13, 1416–1427 (1976)
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bibtex

Allen1978

P. B. Allen
New method for solving Boltzmann’s equation for electrons in metals
Phys. Rev. B 17, 3725-3734 (1978)
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bibtex

Allen1981

P. B. Allen, M. Cardona
Theory of the temperature dependence of the direct gap of germanium
Phys. Rev. B 23, 1495-1505 (1981)
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bibtex

Allen1983

P. B. Allen, M. Cardona
Temperature dependence of the direct gap of Si and Ge
Phys. Rev. B 27, 4760-4769 (1983)
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bibtex

Allen1983a

Philip B. Allen, Božidar Mitrović
Theory of Superconducting Tc
Elsevier (1983)isbn: 9780126077377
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bibtex

Allen1983b

Allen P. B.
A Tetrahedron Method for Doubly Constrained Brillouin Zone Integrals Application to Silicon Optic Phonon Decay
physica status solidi (b) 120, 529-538 (1983)
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bibtex

Allen1983c

Philip B. Allen, Božidar Mitrović
Theory of Superconducting Tc
Academic Press (1983)
URL: http://www.sciencedirect.com/science/article/pii/S0081194708606657
bibtex

Allen1987

Philip B. Allen
Theory of thermal relaxation of electrons in metals
Phys. Rev. Lett. 59, 1460–1463 (1987)
URL: https://link.aps.org/doi/10.1103/PhysRevLett.59.1460
bibtex

Allen1987a

M. P. Allen, D. J. Tildesley
Computer Simulation of Liquids
Oxford University Press (1987)

bibtex

Allen1996

Philip B. Allen
Boltzmann Theory and Resistivity of Metals
Springer US (1996)
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Allen2013

P. B. Allen, T. Berlijn, D. A. Casavant, J. M. Soler
Recovering hidden Bloch character: Unfolding electrons, phonons, and slabs
Phys. Rev. B 87, 085322 (2013)
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Amadon2006

B. Amadon, S. Biermann, A. Georges, F. Aryasetiawan
The α−γ Transition of Cerium Is Entropy Driven
Phys. Rev. Lett. 96, 066402 (2006)
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bibtex

Amadon2008

B. Amadon, F. Lechermann, A. Georges, F. Jollet, T. O. Wehling, A. I. Lichtenstein
Plane-wave based electronic structure calculations for correlated materials using dynamical mean-field theory and projected local orbitals
Phys. Rev. B 77, 205112 (2008)
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bibtex

Amadon2008a

B. Amadon, F. Jollet, M. Torrent
γ and β cerium: LDA+U calculations of ground-state parameters
Phys. Rev. B 77, 155104 (2008)
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bibtex

Amadon2012

B Amadon
A self-consistent DFT + DMFT scheme in the projector augmented wave method: Applications to cerium, \(Ce_2O_3\) and Pu2O3with the Hubbard I solver and comparison to DFT +U
J. Phys.: Condens. Matter 24, 075604 (2012)
URL: https://doi.org/10.1088/0953-8984/24/7/075604
bibtex

Amadon2014

Bernard Amadon, Thomas Applencourt, Fabien Bruneval
Screened Coulomb interaction calculations: CRPA implementation and applications to dynamical screening and self-consistency in uranium dioxide and cerium
Phys. Rev. B 89, 125110 (2014)
URL: https://doi.org/10.1103/physrevb.89.125110
bibtex

Amadon2015

Bernard Amadon, Alexis Gerossier
Comparative analysis of models for the α−γ phase transition in cerium: A DFT+DMFT study using Wannier orbitals
Phys. Rev. B 91, 161103 (2015)
URL: https://doi.org/10.1103/physrevb.91.161103
bibtex

Amadon2016

Bernard Amadon
First-principles DFT+DMFT calculations of structural properties of actinides: Role of Hund’s exchange, spin-orbit coupling, and crystal structure
Phys. Rev. B 94, 115148 (2016)
DOI: https://doi.org/10.1103/PhysRevB.94.115148
bibtex

Ambrosetti2012

A. Ambrosetti, P. L. Silvestrelli
van der Waals interactions in density functional theory using Wannier functions: Improved \(C_6\) and \(C_3\) coefficients by a different approach
Phys. Rev. B 85, 073101 (2012)
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Andrinopoulos2011

Lampros Andrinopoulos, Nicholas D. M. Hine, Arash A. Mostofi
Calculating dispersion interactions using maximally localized Wannier functions
J. Chem. Phys. 135, 154105 (2011)
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Anglade2008

P.-M. Anglade, X. Gonze
Preconditioning of self-consistent-field cycles in density-functional theory: The extrapolar method
Phys. Rev. B 78, 045126 (2008)
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bibtex

Angyan2006

János G Ángyán, Iann Gerber, Martijn Marsman
Spherical harmonic expansion of short-range screened Coulomb interactions
Journal of Physics A: Mathematical and General 39, 8613 (2006)
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Anisimov1991

V. I. Anisimov, O. Gunnarsson
Density-functional calculation of effective Coulomb interactions in metals
Phys. Rev. B 43, 7570-7574 (1991)
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Anisimov1991a

Vladimir I. Anisimov, Jan Zaanen, Ole K. Andersen
Band theory and Mott insulators: Hubbard U instead of Stoner I
Phys. Rev. B 44, 943–954 (1991)
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Antipov2012

A. E. Antipov, I. S. Krivenko, V. I. Anisimov, A. I. Lichtenstein, A. N. Rubtsov
Role of rotational symmetry in the magnetism of a multiorbital model
Phys. Rev. B 86, 155107 (2012)
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Antonius2014

G. Antonius, S. Poncé, P. Boulanger, M. Côté, X. Gonze
Many-Body Effects on the Zero-Point Renormalization of the Band Structure
Phys. Rev. Lett. 112, 215501 (2014)
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bibtex

Antonius2015

G. Antonius, S. Poncé, E. Lantagne-Hurtubise, G. Auclair, X. Gonze, M. Côté
Dynamical and anharmonic effects on the electron-phonon coupling and the zero-point renormalization of the electronic structure
Phys. Rev. B 92, 085137 (2015)
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Anzellini2020

Simone Anzellini, Francois Bottin, Johann Bouchet, Agn`es Dewaele
Phase transitions and equation of state of zirconium under high pressure
Phys. Rev. B 102, 184105 (2020)
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bibtex

Arias1992

T. A. Arias, M. C. Payne, J. D. Joannopoulos
Ab initio molecular-dynamics techniques extended to large-length-scale systems
Phys. Rev. B 45, 1538-1549 (1992)
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bibtex

Armiento2005

R. Armiento, A. E. Mattsson
Functional designed to include surface effects in self-consistent density functional theory
Phys. Rev. B 72, 085108 (2005)
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bibtex

Arnaud2000

B. Arnaud, M. Alouani
All-electron projector-augmented-wave \(GW\) approximation: Application to the electronic properties of semiconductors
Phys. Rev. B 62, 4464–4476 (2000)
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Arnaud2013

B. Arnaud, Y. Giret
Electron Cooling and Debye-Waller Effect in Photoexcited Bismuth
Phys. Rev. Lett. 110, 016405 (2013)
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Arponen1979

J Arponen, E Pajanne
Angular correlation in positron annihilation
J. Phys. F: Met. Phys. 9, 2359-2376 (1979)
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Arponen1979a

J Arponen, E Pajanne
Electron liquid in collective description. III. Positron annihilation
Annals of Physics 121, 343 - 389 (1979)
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Aryasetiawan2004

F. Aryasetiawan, M. Imada, A. Georges, G. Kotliar, S. Biermann, A. I. Lichtenstein
Frequency-dependent local interactions and low-energy effective models from electronic structure calculations
Phys. Rev. B 70, 195104 (2004)
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bibtex

Aryasetiawan2006

F. Aryasetiawan, K. Karlsson, O. Jepsen, U. Sch"{o}nberger
Calculations of Hubbard U from first-principles
Phys. Rev. B 74, 125106 (2006)
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Ashcroft1976

N. W. Ashcroft, D. Mermin
Solid State Physics
Brooks Cole (1976)isbn: 978-0030839931
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Audouze2006

Christophe Audouze, François Jollet, Marc Torrent, Xavier Gonze
Projector augmented-wave approach to density-functional perturbation theory
Phys. Rev. B 73, 235101 (2006)
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Audouze2008

Christophe Audouze, François Jollet, Marc Torrent, Xavier Gonze
Comparison between projector augmented-wave and ultrasoft pseudopotential formalisms at the density-functional perturbation theory level
Phys. Rev. B 78, 035105 (2008)
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Aulbur2001

Wilfried G. Aulbur, Lars {J"{o}nsson}, John W. Wilkins
Quasiparticle Calculations in Solids
Academic Press (2000)
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Autschbach2013

Jochen Autschbach
High Resolution NMR Spectroscopy: Chapter 4. Relativistic Effects on NMR Parameters
Elsevier Inc. Chapters (2013)

bibtex

Azizi2023

Maryam Azizi, Jan Wilhelm, Dorothea Golze, Matteo Giantomassi, Ram{'o}n L. Panad{'e}s-Barrueta, Francisco A. Delesma, Alexander Buccheri, Andris Gulans, Patrick Rinke, Claudia Draxl, Xavier Gonze
Time-frequency component of the GreenX library: minimax grids for efficient RPA and GW calculations
J. of Open Source Software 8, 5570 (2023)

bibtex

Azizi2024

Maryam Azizi, Jan Wilhelm, Dorothea Golze, Francisco A. Delesma, Ram'on L. Panad'es-Barrueta, Patrick Rinke, Matteo Giantomassi, Xavier Gonze
Validation of the GreenX library time-frequency component for efficient \(GW\) and RPA calculations
Phys. Rev. B 109, 245101 (2024)
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Bachelet1982

G. B. Bachelet, D. R. Hamann, M. Schl"{u}ter
Pseudopotentials that work: From H to Pu
Phys. Rev. B 26, 4199-4228 (1982)
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Bader1994

R.F.W. Bader
Atoms in Molecules: A Quantum Theory
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Baer2013

Roi Baer, Daniel Neuhauser, Eran Rabani
Self-Averaging Stochastic Kohn–Sham Density-Functional Theory
Phys. Rev. Lett. 111, 106402 (2013)
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Baldereschi1988

Alfonso Baldereschi, Stefano Baroni, Raffaele Resta
Band Offsets in Lattice-Matched Heterojunctions: A Model and First-Principles Calculations for GaAs/AlAs
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B. Barbiellini, M. J. Puska, T. Torsti, R. M. Nieminen
Gradient correction for positron states in solids
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Barbiellini1996

B. Barbiellini, M. J. Puska, T. Korhonen, A. Harju, T. Torsti, R. M. Nieminen
Calculation of positron states and annihilation in solids: A density-gradient-correction scheme
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Baroni1986

Stefano Baroni, Raffaele Resta
Ab initio calculation of the macroscopic dielectric constant in silicon
Phys. Rev. B 33, 7017-7021 (1986)
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Baroni1987

Stefano Baroni, Paolo Giannozzi, Andrea Testa
Green’s-function approach to linear response in solids
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Baroni2001

Stefano Baroni, Stefano de Gironcoli, Andrea Dal Corso, Paolo Giannozzi
Phonons and related crystal properties from density-functional perturbation theory
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U von Barth, L Hedin
A local exchange-correlation potential for the spin polarized case. i
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G.F. Bassani, G.P. Parravicini
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Bastogne2024a

Louis Bastogne, Fernando Gómez-Ortiz, Sriram Anand, Philippe Ghosez
Dynamical Manipulation of Polar Topologies from Acoustic Phonon Excitations
Nano Letters 24, 13783-13789 (2024)
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Bastogne2025a

Louis Bastogne, Jordan Bieder, Alexandre Martin, Marcus Schmitt, Alireza Sasani, Huazhang Zhang, Fernando G{'o}mez-Ortiz, Subhadeep Bandyopadhyay, Xu He, Philippe Ghosez
Second-principles effective interatomic potentials with \sc Multibinit (2025)

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Bastogne2025b

Louis Bastogne, Philippe Ghosez
Ferroelectric Properties and Topological Textures in \cePbTiO3 from a Second-Principles Open-Source interatomic potential (2025)
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F. Bechstedt, R. Del Sole, G. Cappellini, Lucia Reining
An efficient method for calculating quasiparticle energies in semiconductors
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A. D. Becke
Density functional calculations of molecular bond energies
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Becke1986a

A. D. Becke
On the large-gradient behavior of the density functional exchange energy
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A. D. Becke
Density-functional exchange-energy approximation with correct asymptotic behavior
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A. D. Becke, K. E. Edgecombe
A simple measure of electron localization in atomic and molecular systems
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Axel D. Becke
Density-functional thermochemistry. V. Systematic optimization of exchange-correlation functionals
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Axel D. Becke, Erin R. Johnson
A simple effective potential for exchange
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Lorin X. Benedict, Eric L. Shirley, Robert B. Bohn
Optical Absorption of Insulators and the Electron-Hole Interaction: An ab initio Calculation
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Bengone2000

O. Bengone, M. Alouani, P. Bl"{o}chl, J. Hugel
Implementation of the projector augmented-wave LDA+U method: Application to the electronic structure of NiO
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Nimrod Benshalom, Guy Reuveni, Roman Korobko, Omer Yaffe, Olle Hellman
Dielectric response of rock-salt crystals at finite temperatures from first principles
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Herman JC Berendsen, JPM van Postma, Wilfred F van Gunsteren, ARHJ DiNola, JR Haak
Molecular dynamics with coupling to an external bath
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Berger2015

J. A. Berger
Fully Parameter-Free Calculation of Optical Spectra for Insulators, Semiconductors, and Metals from a Simple Polarization Functional
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Bergeron2016

Dominic Bergeron, A.-M. S. Tremblay
Algorithms for optimized maximum entropy and diagnostic tools for analytic continuation
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Berne1998

Classical and Quantum Dynamics in Condensed Phase Simulations
World Scientific, Singapore (1998)

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Bethkenhagen2023

Mandy Bethkenhagen, Abhiraj Sharma, Phanish Suryanarayana, John E. Pask, Babak Sadigh, Sebastien Hamel
Properties of carbon up to 10 million kelvin from Kohn–Sham density functional theory molecular dynamics
Phys. Rev. E 107, 015306 (2023)
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Bhagavantam1964

S. Bhagavantam, P. V. Pantulu
Crystal symmetry and physical properties: Application of group theory
Proceedings of the Indian Academy of Sciences - Section A 60, 1–10 (1964)
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Bieder2014

J. Bieder, B. Amadon
Thermodynamics of the α-γ transition in cerium from first principles
Phys. Rev. B 89, 195132 (2014)
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Zwanziger2009a

J. W. Zwanziger
First-principles study of the nuclear quadrupole resonance parameters and orbital ordering inLaTiO3
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Zwanziger2012

J.W. Zwanziger, J. Galbraith, Y. Kipouros, M. Torrent, M. Giantomassi, X. Gonze
Finite homogeneous electric fields in the projector augmented wave formalism: Applications to linear and nonlinear response
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Zwanziger2016

J.W. Zwanziger
Computation of NMR observables: Consequences of projector-augmented wave sphere overlap
Solid State Nuclear Magnetic Resonance 80, 14-18 (2016)
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Zwanziger2023

J. W. Zwanziger, M. Torrent, X. Gonze
Orbital magnetism and chemical shielding in the projector augmented-wave formalism
Phys. Rev. B 107, 165157 (2023)
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Zwanziger2025a

JW Zwanziger, AR Farrant, U Werner-Zwanziger
Relativistic effects on the magnetic shielding in solids: first-principles computation in a plane wave code
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abinit_website

The \textscABINIT website (2025)
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abipy_website

AbiPy (2025)
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ai4scienceImpactLargeLanguage2023

{AI4Science}, {Microsoft Research \& Quantum}, {Microsoft Azure}
The Impact of Large Language Models on Scientific Discovery: A Preliminary Study Using GPT-4 (2023)
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alkauskas2014

Audrius Alkauskas, Bob B Buckley, David D Awschalom, Chris G Van de Walle
First-principles theory of the luminescence lineshape for the triplet transition in diamond NV centres
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anaconda

anaconda (2025)
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ase-paper

Ask Hjorth Larsen, Jens Jørgen Mortensen, Jakob Blomqvist, Ivano E Castelli, Rune Christensen, Marcin Dułak, Jesper Friis, Michael N Groves, Bjørk Hammer, Cory Hargus, Eric D Hermes, Paul C Jennings, Peter Bjerre Jensen, James Kermode, John R Kitchin, Esben Leonhard Kolsbjerg, Joseph Kubal, Kristen Kaasbjerg, Steen Lysgaard, Jón Bergmann Maronsson, Tristan Maxson, Thomas Olsen, Lars Pastewka, Andrew Peterson, Carsten Rostgaard, Jakob Schiøtz, Ole Sch"{u}tt, Mikkel Strange, Kristian S Thygesen, Tejs Vegge, Lasse Vilhelmsen, Michael Walter, Zhenhua Zeng, Karsten W Jacobsen
The atomic simulation environment—a Python library for working with atoms
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atompaw_website

Atompaw (2025)
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autotools_website

Autotools (2025)
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berendsen_1984_molecular

Herman JC Berendsen, JPM van Postma, Wilfred F Van Gunsteren, ARHJ DiNola, Jan R Haak
Molecular dynamics with coupling to an external bath
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bouquiaux2021importance

Julien Bouquiaux, Samuel Ponc{'e}, Yongchao Jia, Anna Miglio, Masayoshi Mikami, Xavier Gonze
Importance of Long-Range Channel Sr Displacements for the Narrow Emission in Sr [Li2Al2O2N2]: Eu2+ Phosphor
Advanced Optical Materials 9, 2100649 (2021)
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bouquiaux2023first

Julien Bouquiaux, Samuel Ponc{'e}, Yongchao Jia, Anna Miglio, Masayoshi Mikami, Xavier Gonze
A first-principles explanation of the luminescent line shape of SrLiAl3N4: Eu2+ phosphor for light-emitting diode applications
Chem. Mater. 35, 5353–5361 (2023)
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bousquet2024structural

Eric Bousquet, Mauro Fava, Zachary Romestan, Fernando G{'o}mez-Ortiz, Emma E McCabe, Aldo H Romero
Structural chirality and related properties in the periodic inorganic solids: Review and perspectives
J. Phys.: Condens. Matter 37, 163004 (2024)
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braun2024

Maxime Braun, Bogdan Guster, Andrea Urru, Houria Kabbour, Eric Bousquet
Large dynamical magnetic effective charges and antimagnetoelectricity from spin and orbital origin in multiferroic \ceBiCoO3
Phys. Rev. B 110, 144442 (2024)
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bruneval2019improved

Fabien Bruneval
Improved density matrices for accurate molecular ionization potentials
Phys. Rev. B 99, 041118 (2019)
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bruneval2021improved

Fabien Bruneval, Mauricio Rodriguez-Mayorga, Patrick Rinke, Marc Dvorak
Improved one-shot total energies from the linearized GW density matrix
J. Chem. Theory Comput. 17, 2126–2136 (2021)
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bryce2000indirect

David L Bryce, Roderick E Wasylishen
Indirect nuclear spin- spin coupling tensors in diatomic Molecules: A comparison of results obtained by experiment and first principles calculations
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cc4s_website

Cc4s (2025)
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chiangLLaMPLargeLanguage2024

Yuan Chiang, Elvis Hsieh, Chia-Hong Chou, Janosh Riebesell
LLaMP: Large Language Model Made Powerful for High-fidelity Materials Knowledge Retrieval and Distillation (2024)
URL: http://arxiv.org/abs/2401.17244
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cmake_website

CMake (2025)
URL: https://cmake.org
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cublas_website

cuBLAS (2025)
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cufft_website

cuFFT (2025)
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cusolver_website

cuSolver (2025)
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deMelo2023

Pedro Miguel M. C. de Melo, Joao C. de Abreu, Bogdan Guster, Matteo Giantomassi, Zeila Zanolli, Xavier Gonze, Matthieu J. Verstraete
High-throughput analysis of Fr"ohlich-type polaron models
npj Comput. Mater. 9, 147 (2023)
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denawi2023gw

Adam Hassan Denawi, Fabien Bruneval, Marc Torrent, Mauricio Rodr{'\i}guez-Mayorga
GW density matrix for estimation of self-consistent GW total energies in solids
Phys. Rev. B 108, 125107 (2023)

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easybuild_website

Easybuild (2025)
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elk

The Elk Code (2025)
URL: http://elk.sourceforge.net/
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fang2022evolutionary

Mu-Huai Fang, Zhen Bao, Wen-Tse Huang, Ru-Shi Liu
Evolutionary generation of phosphor materials and their progress in future applications for light-emitting diodes
Chem. Rev. 122, 11474–11513 (2022)
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gaoRetrievalAugmentedGenerationLarge2024

Yunfan Gao, Yun Xiong, Xinyu Gao, Kangxiang Jia, Jinliu Pan, Yuxi Bi, Yi Dai, Jiawei Sun, Meng Wang, Haofen Wang
Retrieval-Augmented Generation for Large Language Models: A Survey (2024)
URL: http://arxiv.org/abs/2312.10997
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he_2021_tb2j

Xu He, Nicole Helbig, Matthieu J. Verstraete, Eric Bousquet
TB2J: A python package for computing magnetic interaction parameters
Comput. Phys. Commun. 264, 107938 (2021)
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he_2025_lawaf

Xu He, Gian-Marco Rignanese, Philippe Ghosez
LaWaF: a package for the flexible construction of lattice Wannier functions (2025)

bibtex

homebrew_website

Homebrew (2025)
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huang1950theory

Kun Huang, Avril Rhys
Theory of light absorption and non-radiative transitions in F-centres
Proc. R. Soc. London, Ser. A 204, 406–423 (1950)
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jablonka14ExamplesHow2023

Kevin Maik Jablonka, Qianxiang Ai, Alexander Al-Feghali, Shruti Badhwar, Joshua D. Bocarsly, Andres M. Bran, Stefan Bringuier, L. Catherine Brinson, Kamal Choudhary, Defne Circi, Sam Cox, Wibe A. de Jong, Matthew L. Evans, Nicolas Gastellu, Jerome Genzling, María Victoria Gil, Ankur K. Gupta, Zhi Hong, Alishba Imran, Sabine Kruschwitz, Anne Labarre, Jakub Lála, Tao Liu, Steven Ma, Sauradeep Majumdar, Garrett W. Merz, Nicolas Moitessier, Elias Moubarak, Beatriz Mouriño, Brenden Pelkie, Michael Pieler, Mayk Caldas Ramos, Bojana Rankovi'{c}, Samuel G. Rodriques, Jacob N. Sanders, Philippe Schwaller, Marcus Schwarting, Jiale Shi, Berend Smit, Ben E. Smith, Joren Van Herck, Christoph V"{o}lker, Logan Ward, Sean Warren, Benjamin Weiser, Sylvester Zhang, Xiaoqi Zhang, Ghezal Ahmad Zia, Aristana Scourtas, K. J. Schmidt, Ian Foster, Andrew D. White, Ben Blaiszik
14 Examples of How LLMs Can Transform Materials Science and Chemistry: A Reflection on a Large Language Model Hackathon
Digital Discovery 2, 1233–1250 (2023)
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jia_2022_dynamic

Jiahui Jia, Xu He, Arsalan Akhtar, Gervasi Herranz, Miguel Pruneda
Dynamic control of octahedral rotation in perovskites by defect engineering
Phys. Rev. B 105, 224112 (2022)
URL: https://link.aps.org/doi/10.1103/PhysRevB.105.224112
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jin2021photoluminescence

Yu Jin, Marco Govoni, Gary Wolfowicz, Sean E Sullivan, F Joseph Heremans, David D Awschalom, Giulia Galli
Photoluminescence spectra of point defects in semiconductors: Validation of first-principles calculations
Phys. Rev. Mater. 5, 084603 (2021)
URL: https://link.aps.org/doi/10.1103/PhysRevMaterials.5.084603
bibtex

kokkos_website

Kokkos performance libray (2025)
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bibtex

langsim

Yuan Chiang, Giuseppe Fisicaro, Jan Janssen, Greg Juhasz, Sarom Leang, Bernadette Mohr, Utkarsh Pratiush, Francesco Ricci, Leopold Talirz, Pablo Andres Unzueta, Trung Vo, Gabriel Vogel, Luke Zondagh, Sebastian Pagel
LangSim (2025)
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bibtex

li2025luminescence

Zewei Li, Jiahao Xie, Muhammad Faizan, Shengqiao Wang, Xiankai Chen, Lijun Zhang
Luminescence From Localized States in Solids: A First-Principles Perspective
Adv. Funct. Mater. 35, 2422716 (2025)
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bibtex

lruj_tutorial

Lórien MacEnulty, Donat Adams
Abinit \textttlrUJ Tutorial (2024)
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bibtex

m.branAugmentingLargeLanguage2024

Andres M. Bran, Sam Cox, Oliver Schilter, Carlo Baldassari, Andrew D. White, Philippe Schwaller
Augmenting Large Language Models with Chemistry Tools
Nature Machine Intelligence 6, 525–535 (2024)
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bibtex

metapsp

Donald R. Hamann
The METAPSP project (2025)
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miretAreLLMsReady2024

Santiago Miret, N. M. Anoop Krishnan
Are LLMs Ready for Real-World Materials Discovery? (2024)
URL: http://arxiv.org/abs/2402.05200
bibtex

openmp_website

OpenMP (2025)
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rabe_1995_localized

KM Rabe, UV Waghmare
Localized basis for effective lattice Hamiltonians: Lattice Wannier functions
Phys. Rev. B 52, 13236 (1995)

bibtex

rocblas_website

rocBLAS (2025)
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bibtex

rocfft_website

rocFFT (2025)
URL: https://github.com/ROCm/rocfft
bibtex

rocsolver_website

rocSolver (2025)
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bibtex

shirts2017reweighting

Michael R. Shirts
Reweighting from the mixture distribution as a better way to describe the Multistate Bennett Acceptance Ratio (2017)

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sio_ab_2019

Weng Hong Sio, Carla Verdi, Samuel Poncé, Feliciano Giustino
Ab initio theory of polarons: Formalism and applications
Phys. Rev. B 99, 235139 (2019)
URL: https://link.aps.org/doi/10.1103/PhysRevB.99.235139
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sio_polarons_2019

Weng Hong Sio, Carla Verdi, Samuel Poncé, Feliciano Giustino
Polarons from First Principles, without Supercells
Phys. Rev. Lett. 122, 246403 (2019)
URL: https://link.aps.org/doi/10.1103/PhysRevLett.122.246403
bibtex

solovyev_2021_exchange

I. V. Solovyev
Exchange interactions and magnetic force theorem
Phys. Rev. B 103, 104428 (2021)
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bibtex

spack_website

Spack (2025)
URL: https://spack.io
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tgcc_website

TGCC supercomputing center (2025)
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vasilchenko_polarons_cubic_2024

Vasilii Vasilchenko, Xavier Gonze
Polarons in the cubic generalized Fr"ohlich model: Spontaneous symmetry breaking
Phys. Rev. B 109, 184301 (2024)
URL: https://link.aps.org/doi/10.1103/PhysRevB.109.184301
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wangDREAMSDensityFunctional2025

Ziqi Wang, Hongshuo Huang, Hancheng Zhao, Changwen Xu, Shang Zhu, Jan Janssen, Venkatasubramanian Viswanathan
DREAMS: Density Functional Theory Based Research Engine for Agentic Materials Simulation (2025)
URL: http://arxiv.org/abs/2507.14267
bibtex

wolfowicz2021quantum

Gary Wolfowicz, F Joseph Heremans, Christopher P Anderson, Shun Kanai, Hosung Seo, Adam Gali, Giulia Galli, David D Awschalom
Quantum guidelines for solid-state spin defects
Nat. Rev. Mater. 6, 906–925 (2021)
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bibtex

yaml_website

YAML (2025)
URL: https://yaml.org
bibtex

yuLargelanguageModelsGamechangers2024

Songlin Yu, Nian Ran, Jianjun Liu
Large-Language Models: The Game-Changers for Materials Science Research
Artificial Intelligence Chemistry 2, 100076 (2024)
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zhang_2023_displacive

Yajun Zhang, Jingtong Zhang, Jiahang Li, M. P. K. Sahoo, Xu He, Jie Wang, Philippe Ghosez
Displacive phase transitions in infinite-layer nickelates from first- and second-principles calculations
Phys. Rev. B 108, 165117 (2023)
URL: https://link.aps.org/doi/10.1103/PhysRevB.108.165117
bibtex

zhang_2023_rareearth

Yajun Zhang, Jingtong Zhang, Xu He, Jie Wang, Philippe Ghosez
Rare-earth control of phase transitions in infinite-layer nickelates
PNAS Nexus 2, 1 (2023)
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bibtex

zhang_2024_finitetemperature

Huazhang Zhang, Hao-Cheng Thong, Louis Bastogne, Churen Gui, Xu He, Philippe Ghosez
Finite-temperature properties of the antiferroelectric perovskite \(\mathrmPbZrO_3\) from a deep-learning interatomic potential
Phys. Rev. B 110, 054109 (2024)
URL: https://link.aps.org/doi/10.1103/PhysRevB.110.054109
bibtex

zhang_2025_electronic

Yajun Zhang, Xu He, Huadong Yong, Jie Wang, Xingyi Zhang, Philippe Ghosez
Electronic and magnetic transitions in infinite-layer nickelates by strain-orbital engineering
Phys. Rev. B 111, 045133 (2025)
URL: https://link.aps.org/doi/10.1103/PhysRevB.111.045133
bibtex

zhaoRetrievalAugmentedGeneration2024

Siyun Zhao, Yuqing Yang, Zilong Wang, Zhiyuan He, Luna K. Qiu, Lili Qiu
Retrieval Augmented Generation (RAG) and Beyond: A Comprehensive Survey on How to Make Your LLMs Use External Data More Wisely (2024)
URL: http://arxiv.org/abs/2409.14924
bibtex

zhouGreaterAutonomyMaterials2025

Lianhao Zhou, Hongyi Ling, Keqiang Yan, Kaiji Zhao, Xiaoning Qian, Raymundo Arróyave, Xiaofeng Qian, Shuiwang Ji
Toward Greater Autonomy in Materials Discovery Agents: Unifying Planning, Physics, and Scientists (2025)
URL: https://arxiv.org/abs/2506.05616v2
bibtex

zhuLargeLanguageModels2024

Yutao Zhu, Huaying Yuan, Shuting Wang, Jiongnan Liu, Wenhan Liu, Chenlong Deng, Haonan Chen, Zheng Liu, Zhicheng Dou, Ji-Rong Wen
Large Language Models for Information Retrieval: A Survey (2024)
URL: http://arxiv.org/abs/2308.07107
bibtex

zimmermannReflections2024Large2024

Yoel Zimmermann, Adib Bazgir, Zartashia Afzal, Fariha Agbere, Qianxiang Ai, Nawaf Alampara, Alexander Al-Feghali, Mehrad Ansari, Dmytro Antypov, Amro Aswad, Jiaru Bai, Viktoriia Baibakova, Devi Dutta Biswajeet, Erik Bitzek, Joshua D. Bocarsly, Anna Borisova, Andres M. Bran, L. Catherine Brinson, Marcel Moran Calderon, Alessandro Canalicchio, Victor Chen, Yuan Chiang, Defne Circi, Benjamin Charmes, Vikrant Chaudhary, Zizhang Chen, Min-Hsueh Chiu, Judith Clymo, Kedar Dabhadkar, Nathan Daelman, Archit Datar, Matthew L. Evans, Maryam Ghazizade Fard, Giuseppe Fisicaro, Abhijeet Sadashiv Gangan, Janine George, Jose D. Cojal Gonzalez, Michael G"{o}tte, Ankur K. Gupta, Hassan Harb, Pengyu Hong, Abdelrahman Ibrahim, Ahmed Ilyas, Alishba Imran, Kevin Ishimwe, Ramsey Issa, Kevin Maik Jablonka, Colin Jones, Tyler R. Josephson, Greg Juhasz, Sarthak Kapoor, Rongda Kang, Ghazal Khalighinejad, Sartaaj Khan, Sascha Klawohn, Suneel Kuman, Alvin Noe Ladines, Sarom Leang, Magdalena Lederbauer, Sheng-Lun Mark Liao, Hao Liu, Xuefeng Liu, Stanley Lo, Sandeep Madireddy, Piyush Ranjan Maharana, Shagun Maheshwari, Soroush Mahjoubi, José A. Márquez, Rob Mills, Trupti Mohanty, Bernadette Mohr, Seyed Mohamad Moosavi, Alexander Mo\ss{}hammer, Amirhossein D. Naghdi, Aakash Naik, Oleksandr Narykov, Hampus N"{a}sstr"{o}m, Xuan Vu Nguyen, Xinyi Ni, Dana O’Connor, Teslim Olayiwola, Federico Ottomano, Aleyna Beste Ozhan, Sebastian Pagel, Chiku Parida, Jaehee Park, Vraj Patel, Elena Patyukova, Martin Hoffmann Petersen, Luis Pinto, Jos'{e} M. Pizarro, Dieter Plessers, Tapashree Pradhan, Utkarsh Pratiush, Charishma Puli, Andrew Qin, Mahyar Rajabi, Francesco Ricci, Elliot Risch, Martiño R'{i}os-Garc'{i}a, Aritra Roy, Tehseen Rug, Hasan M. Sayeed, Markus Scheidgen, Mara Schilling-Wilhelmi, Marcel Schloz, Fabian Sch"{o}ppach, Julia Schumann, Philippe Schwaller, Marcus Schwarting, Samiha Sharlin, Kevin Shen, Jiale Shi, Pradip Si, Jennifer D’Souza, Taylor Sparks, Suraj Sudhakar, Leopold Talirz, Dandan Tang, Olga Taran, Carla Terboven, Mark Tropin, Anastasiia Tsymbal, Katharina Ueltzen, Pablo Andres Unzueta, Archit Vasan, Tirtha Vinchurkar, Trung Vo, Gabriel Vogel, Christoph V"{o}lker, Jan Weinreich, Faradawn Yang, Mohd Zaki, Chi Zhang, Sylvester Zhang, Weijie Zhang, Ruijie Zhu, Shang Zhu, Jan Janssen, Ian Foster, Ben Blaiszik
Reflections from the 2024 Large Language Model (LLM) Hackathon for Applications in Materials Science and Chemistry (2024)
URL: http://arxiv.org/abs/2411.15221
bibtex